EGAF00005204060 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005204060
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	36802064
Sequences flagged as poor quality	0
Sequence length	35-51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC	96203	0.2614065341552582	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	87485	0.23771764540162746	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	78850	0.2142542874769198	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	72902	0.19809215048373374	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG	62725	0.1704388101710817	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT	61787	0.1678900400803607	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	60740	0.16504509094924677	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	54269	0.1474618380099551	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	52160	0.14173118116418687	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	37447	0.10175244518894375	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAACGAT	4385	41.410976	45
AGAACGA	5150	25.21334	44
ACCGCGT	4735	24.7286	6
CCGCGTT	4795	24.554804	7
GACCTTG	20550	24.149363	45
GACCGCG	4860	24.092478	5
AGACCGC	5095	22.980465	4
CGCGTTC	5150	22.905315	8
CAGACCG	5380	22.05251	3
ACGGTAC	14545	21.043959	45
GGACCTT	16975	20.851505	44
ACTATCG	7095	20.843336	45
TACGGAG	5740	20.555882	34
CGATACG	1030	20.318172	31
ATACGGA	5810	20.308496	33
TTGATGC	30220	19.744955	45
CAATACG	4995	19.388659	31
GCGTTCT	6215	19.087706	9
AATACGG	5255	18.513577	32
AAGAACG	6815	18.032547	43