FastQCFastQC Report
Wed 1 May 2024
EGAF00005204326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005204326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42140387
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATGTCGTCCACGTGCGCCACGGCGTTGGTCAGCGCGTCGGCCACCTT473070.11226047829128859No Hit
GTCCACGTGCGCCACGGCGTTGGTCAGCGCGTCGGCCACCTTCTTGCCGT425730.10102659949468427No Hit
GTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGGCCTCCGCACC425600.1009957502288719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)