EGAF00005204388 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005204388
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40573075
Sequences flagged as poor quality	0
Sequence length	35-51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTG	101560	0.25031378568176066	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	89342	0.22020021898759215	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT	83736	0.2063831740630948	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	82336	0.20293260986503978	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	78509	0.1935002461607852	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG	72072	0.17763504491587093	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC	69845	0.1721461831522506	No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA	66687	0.1643626961969237	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC	64087	0.157954505543393	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	59068	0.14558423289336586	No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	54576	0.13451285119503514	No Hit
CTCCCGTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTC	51371	0.1266135238702021	No Hit
CTCTTAACGGTTTCACGCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCA	45759	0.11278169081342737	No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTT	43017	0.10602351436266538	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGCGC	4420	46.937565	45
TGCGCGT	7325	39.2305	45
CGTCTTG	22560	32.49796	45
TTCGGCG	4825	30.42585	44
GACCTTG	19640	28.721815	45
TTGATGC	22025	26.45239	45
GGACCTT	15680	25.599257	44
ACTATCG	8485	23.642397	45
GCGGTCC	9545	23.38797	45
TCGGTCT	6970	22.877453	45
ACGGTAC	25295	21.69066	45
CTCGCTA	6120	21.57544	1
AACGGCC	11285	21.058098	45
TCCCGTC	13555	20.696064	2
CTCCCGT	14590	20.648994	1
CCCGTCT	6800	20.20378	1
TGCGGCG	3120	20.201843	40
ATGCGCG	10230	19.999994	44
ATGGACC	18405	19.936237	42
TTCGCTC	24515	19.739403	33