FastQCFastQC Report
Wed 1 May 2024
EGAF00005204389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005204389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40573075
Total Bases2 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1604330.3954174042761117No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG894980.220584710426804No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTC518440.1277793216314021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)