EGAF00005204528 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005204528
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53487461
Sequences flagged as poor quality	0
Sequence length	35-51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC	158151	0.2956786451314262	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	131659	0.24614927973492703	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	128843	0.24088449440514667	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT	107383	0.20076294143032886	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG	105482	0.1972088374133145	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	104520	0.19541028503858127	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	96322	0.18008332831502322	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	89008	0.16640909539527404	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT	80083	0.14972294160681884	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	69992	0.13085683764275147	No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGC	62715	0.11725177981433818	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	54327	0.10156959964878498	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAACGAT	15580	52.178116	45
AGAACGA	17025	33.755814	44
TCGGCGC	2580	26.698044	45
ACCGCGT	19715	26.605612	6
GACCGCG	19850	26.390884	5
CCGCGTT	20020	26.20743	7
CGCGTTC	20075	26.146587	8
CAGACCG	20530	25.722258	3
AGACCGC	20445	25.655067	4
GACCTTG	33500	25.133017	45
TACGGAG	21475	24.20905	34
ATACGGA	21640	24.004702	33
GCGTTCT	21990	23.940485	9
AAGAACG	22735	23.640093	43
CAATACG	22040	23.589834	31
AATACGG	22225	23.473042	32
CGGAGAG	22705	22.996645	36
ACGGAGA	22915	22.940313	35
CGGAGTG	7660	21.22546	45
GGACCTT	29380	20.171425	44