FastQCFastQC Report
Wed 8 May 2024
EGAF00005204549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005204549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19982165
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT868310.43454250327729754No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG583520.292020409199904No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTC226470.11333606743813797No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)