EGAF00005204572 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005204572
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33951810
Sequences flagged as poor quality	0
Sequence length	35-51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTG	92866	0.2735229727074934	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	63970	0.18841410811382367	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC	62278	0.18343057409899502	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	58017	0.17088043317867296	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGAT	51685	0.15223047018700916	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC	48316	0.14230758242344074	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	42390	0.12485343196725004	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCT	40389	0.11895978447098991	No Hit
CTCCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGG	39620	0.1166948094961653	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	38268	0.11271269484601852	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACCTTG	22565	32.395443	45
GGACCTT	19135	26.992493	44
TTGATGC	18190	25.869108	45
ATGGACC	22490	21.104574	42
GACCGCG	1235	21.079588	5
ACGGTAC	3300	20.797132	45
CGCGTTC	1310	20.209467	8
TGGACCT	23880	19.909496	43
CCGCGTT	1370	19.324608	7
ACCGCGT	1375	19.257063	6
CCCTACG	25755	18.484064	24
CTTCGGG	12290	18.265285	44
CCTACGT	26165	18.220102	25
TACGTTC	26120	18.217596	27
GCGCGCA	11105	18.196505	36
AGCGCGC	11080	18.156631	35
CGCGCAG	11100	18.104189	37
TCGACCG	11215	18.01917	28
CGAGCGC	11265	17.97722	33
GCTTCGG	11660	17.895561	43