EGAF00005207789 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207789
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54616869
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	80335	0.0	8.951362	94-95
AGATCGG	91870	0.0	8.883714	94-95
ATCGGAA	74275	0.0	8.814735	94-95
ACACGTC	25825	0.0	8.628482	94-95
TAGATCG	28775	0.0	8.555754	94-95
TCGGAAG	74750	0.0	7.7971053	94-95
CACACGT	33765	0.0	7.64614	94-95
CGGAAGA	76475	0.0	7.4528275	94-95
GCACACG	40455	0.0	7.432985	94-95
CACGTCT	28735	0.0	7.2856407	94-95
CGTCTGA	19670	0.0	7.186863	94-95
ACGTCTG	24280	0.0	7.031175	94-95
AAGATCG	34355	0.0	7.0091906	94-95
CAGATCG	34185	0.0	6.86006	94-95
GAGATCG	38890	0.0	5.8298807	94-95
AGAGCAC	71985	0.0	5.6251802	94-95
AGCACAC	61930	0.0	5.6244545	94-95
GAGCACA	73070	0.0	5.279327	94-95