EGAF00005207791 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207791
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52690670
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	57990	0.0	9.813839	94-95
AGATCGG	73670	0.0	9.807695	94-95
GATCGGA	62630	0.0	9.545427	94-95
TAGATCG	23355	0.0	9.463414	94-95
ACACGTC	21320	0.0	8.353594	94-95
AAGATCG	27910	0.0	8.161124	94-95
CGTCTGA	16555	0.0	7.716361	94-95
TCGGAAG	58000	0.0	7.1841083	92-93
CAGATCG	28895	0.0	6.912175	94-95
CGGAAGA	61630	0.0	6.8708243	94-95
ACGTCTG	21010	0.0	6.8522544	94-95
CACACGT	28090	0.0	6.773398	94-95
GCACACG	34235	0.0	6.3571944	94-95
GAGATCG	32565	0.0	6.2058325	94-95
CACGTCT	23865	0.0	5.9617066	94-95
AGAGCAC	61790	0.0	5.573217	94-95
AGCACAC	54240	0.0	5.1277885	94-95