EGAF00005207795 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207795
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47045033
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	60360	0.0	9.353348	94-95
GATCGGA	65445	0.0	9.344715	94-95
AGATCGG	74980	0.0	8.859997	94-95
ACACGTC	21570	0.0	8.65899	94-95
TAGATCG	23850	0.0	8.403297	94-95
TCGGAAG	60475	0.0	8.152322	94-95
CACACGT	28045	0.0	7.622024	94-95
CGTCTGA	15825	0.0	7.568155	94-95
CGGAAGA	61990	0.0	7.4444	94-95
ACGTCTG	19975	0.0	7.1645985	94-95
AAGATCG	27940	0.0	6.847619	94-95
CACGTCT	23755	0.0	6.8031306	94-95
GCACACG	33625	0.0	6.6096478	94-95
CAGATCG	28660	0.0	6.453426	94-95
GAGATCG	30795	0.0	5.996167	94-95
AGAGCAC	59315	0.0	5.7200813	94-95
AGCACAC	51300	0.0	5.449419	94-95
GAGCACA	61280	0.0	5.0864058	94-95