EGAF00005207801 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207801
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51074250
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	74715	0.0	8.986891	94-95
ATCGGAA	69715	0.0	8.928865	94-95
ACACGTC	25060	0.0	8.758122	94-95
TAGATCG	26845	0.0	8.210414	94-95
AGATCGG	84135	0.0	7.991747	94-95
CGTCTGA	18975	0.0	7.7274857	94-95
CACACGT	32235	0.0	7.6453657	94-95
CGGAAGA	71500	0.0	7.509321	94-95
ACGTCTG	23360	0.0	7.365106	94-95
TCGGAAG	68185	0.0	7.1366568	92-93
CACGTCT	27490	0.0	6.91265	94-95
GCACACG	38495	0.0	6.76447	94-95
CAGATCG	31065	0.0	6.5462303	94-95
AAGATCG	31515	0.0	6.4625945	94-95
AGAGCAC	68655	0.0	5.6937943	94-95
GAGATCG	35550	0.0	5.668036	94-95
AGCACAC	59045	0.0	5.3657026	94-95
GAGCACA	69980	0.0	5.30248	94-95