EGAF00005207811 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207811
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52955227
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	70145	0.0	9.888809	94-95
TAGATCG	26040	0.0	9.474505	94-95
ATCGGAA	64100	0.0	9.468031	94-95
AGATCGG	80305	0.0	9.342025	94-95
CGTCTGA	18060	0.0	8.780644	94-95
ACACGTC	24520	0.0	8.278722	94-95
AAGATCG	30850	0.0	7.952289	94-95
ACGTCTG	23080	0.0	7.712754	94-95
TCGGAAG	64330	0.0	7.637964	94-95
CACACGT	31025	0.0	7.381763	94-95
CACGTCT	27250	0.0	7.0418463	94-95
CAGATCG	29945	0.0	6.96431	94-95
GCACACG	37375	0.0	6.740364	94-95
CGGAAGA	65595	0.0	6.691873	94-95
GAGATCG	34415	0.0	6.3319836	94-95
AGAGCAC	65720	0.0	5.237717	94-95
AGCACAC	57700	0.0	5.220016	94-95