EGAF00005207837 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207837
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55459604
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	77075	0.0	9.716837	94-95
AGATCGG	89375	0.0	9.690649	94-95
ATCGGAA	71025	0.0	9.5358	94-95
TAGATCG	27800	0.0	9.0200615	94-95
ACACGTC	25325	0.0	8.619273	94-95
CGTCTGA	19105	0.0	7.973277	94-95
TCGGAAG	69220	0.0	7.6901	92-93
CGGAAGA	72790	0.0	7.432623	94-95
ACGTCTG	23835	0.0	7.289952	94-95
CACACGT	32675	0.0	7.2644563	94-95
CAGATCG	32880	0.0	7.2089825	94-95
CACGTCT	27635	0.0	7.050761	94-95
AAGATCG	33060	0.0	6.9570694	94-95
GCACACG	38235	0.0	6.9435983	94-95
GAGATCG	38110	0.0	6.57984	94-95
AGCACAC	60285	0.0	5.875555	94-95
AGAGCAC	70870	0.0	5.564874	94-95
GAGCACA	71440	0.0	5.061215	94-95
GAAGAGC	104440	0.0	5.0295434	94-95