EGAF00005207843 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207843
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54929676
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	64875	0.0	8.687121	94-95
AGATCGG	79615	0.0	8.681096	94-95
GATCGGA	69620	0.0	8.658515	94-95
TAGATCG	25700	0.0	8.587525	94-95
ACACGTC	24640	0.0	7.948235	94-95
TCGGAAG	66445	0.0	7.7832985	94-95
CGTCTGA	18430	0.0	7.4742246	94-95
CGGAAGA	68420	0.0	7.1866045	94-95
AAGATCG	31780	0.0	6.784413	94-95
ACGTCTG	23545	0.0	6.7662272	94-95
CACACGT	32030	0.0	6.609919	94-95
CACGTCT	26970	0.0	6.573163	94-95
GCACACG	37545	0.0	6.3009872	94-95
CAGATCG	29810	0.0	6.1779847	94-95
AGAGCAC	66400	0.0	5.6012783	94-95
GAGATCG	32895	0.0	5.334594	94-95
AGCACAC	58075	0.0	5.0790286	94-95