FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46754202
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA341300.08.6799394-95
AGATCGG398100.08.32026794-95
ATCGGAA325950.08.29704994-95
TAGATCG129100.07.533694394-95
TCGGAAG353000.06.55775394-95
CGGAAGA393150.06.083687394-95
ACACGTC153900.05.819916294-95
AAGATCG186900.05.575555394-95
CAGATCG180250.05.354543794-95
CACACGT206100.05.068182594-95
Produced by FastQC (version 0.11.5)