EGAF00005207850 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207850
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46754202
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCGG	39085	0.0	8.5385275	94-95
GATCGGA	33140	0.0	8.315886	94-95
ATCGGAA	32065	0.0	8.059509	94-95
AGCGTCG	13475	0.0	7.9260354	94-95
TAGATCG	12555	0.0	7.650032	94-95
CGTCGTG	12000	0.0	7.5556307	94-95
GCGTCGT	11440	0.0	6.8248644	92-93
TCGTGTA	10465	0.0	6.7059455	94-95
GTCGTGT	11660	0.0	6.63372	94-95
TCGGAAG	35140	0.0	6.386124	92-93
GAGCGTC	18810	0.0	6.3724403	94-95
AAGAGCG	25295	0.0	6.2879	94-95
AAGATCG	17910	0.0	6.1778436	94-95
CGGAAGA	39415	0.0	5.958768	94-95
CGTGTAG	11705	0.0	5.864245	94-95
AGAGCGT	20460	0.0	5.770906	94-95
CAGATCG	18225	0.0	5.4246097	94-95