FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57733863
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA992100.09.57549594-95
ATCGGAA910900.09.52720694-95
AGATCGG1139600.09.10406794-95
TAGATCG348400.09.06103694-95
ACACGTC306650.08.95915894-95
TCGGAAG901100.08.65691794-95
CGGAAGA916950.07.90379294-95
CGTCTGA230900.07.664767394-95
AAGATCG405450.07.599692394-95
CACACGT390450.07.56075294-95
CACGTCT341000.07.20596994-95
ACGTCTG290350.07.018926694-95
GCACACG477650.06.99703394-95
CAGATCG419850.06.53778394-95
GAGATCG463900.06.2270294-95
AGAGCAC823750.06.146492594-95
AGCACAC698100.05.74775894-95
GAGCACA829250.05.511909594-95
AAGAGCA1068650.05.47472294-95
GAAGAGC1202850.05.41110694-95
Produced by FastQC (version 0.11.5)