FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62000011
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC410500.09.59018294-95
CGTCTGA297800.09.18136994-95
TAGATCG501050.09.05707894-95
GATCGGA1398700.09.020493594-95
ATCGGAA1284050.09.00692794-95
AGATCGG1592500.08.918715594-95
CACACGT513650.08.666394-95
ACGTCTG363950.08.34884694-95
CGGAAGA1234350.08.21291794-95
GCACACG609550.08.19184494-95
TCGGAAG1236450.08.16494894-95
CACGTCT438050.07.840352594-95
AAGATCG552250.07.563216794-95
AGAGCAC1029200.07.101998394-95
AGCACAC863650.06.98212594-95
CAGATCG538550.06.891838694-95
GAGATCG582150.06.71146194-95
GAGCACA1027450.06.389198394-95
GAAGAGC1493850.06.188276394-95
AAGAGCA1332550.06.16859194-95
Produced by FastQC (version 0.11.5)