FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48298108
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA266750.09.81136294-95
ACACGTC381400.09.78924594-95
ACGTCTG328900.09.01490894-95
ATCGGAA1226400.08.99626894-95
CACACGT466800.08.9518794-95
CACGTCT391050.08.77639694-95
AGATCGG1512700.08.73752294-95
GATCGGA1336250.08.72269294-95
TCGGAAG1176300.08.7094794-95
TAGATCG468950.08.52700994-95
CGGAAGA1134650.08.42679994-95
GCACACG549800.08.41447994-95
AAGATCG509750.07.72045394-95
AGAGCAC904850.07.42721194-95
CAGATCG471850.07.139491694-95
AGCACAC750600.07.064304494-95
GAAGAGC1298550.06.849955694-95
GAGCACA891500.06.779950694-95
AAGAGCA1154000.06.74474794-95
GAGATCG536650.06.680790494-95
Produced by FastQC (version 0.11.5)