FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52689060
Sequences flagged as poor quality0
Sequence length25-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA368050.010.67636694-95
ACACGTC547950.010.36507894-95
ACGTCTG453350.09.71816794-95
CACACGT660200.09.27387194-95
ATCGGAA1732050.09.21853894-95
CACGTCT538750.09.13372794-95
GATCGGA1904550.09.01897694-95
AGATCGG2149500.08.86981194-95
TAGATCG596150.08.67699194-95
TCGGAAG1654700.08.51147794-95
CGGAAGA1610050.08.43621394-95
GCACACG807550.08.35325494-95
AGAGCAC1232550.07.986985794-95
AGCACAC1001850.07.87200194-95
AAGATCG673400.07.5911394-95
GAGCACA1180450.07.53721694-95
CAGATCG682950.07.326846694-95
GTCTGAA514800.07.218746794-95
AAGAGCA1477100.07.172703794-95
GAGATCG794700.07.108448594-95
Produced by FastQC (version 0.11.5)