FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57262311
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA755850.012.02023894-95
TAGATCG283450.010.86610394-95
ATCGGAA676900.010.4648694-95
AGATCGG854050.010.13008994-95
CGTCTGA191200.09.163259594-95
AAGATCG335950.08.82556594-95
TCGGAAG674800.08.21770894-95
ACACGTC242300.07.96334194-95
CAGATCG326650.07.919590594-95
GAGATCG365550.07.616356494-95
CACACGT325800.07.425794-95
GCACACG375300.07.409731494-95
CGGAAGA685700.06.89822494-95
CACGTCT272450.06.73221694-95
ACGTCTG234300.06.621865794-95
AGAGCAC673750.05.50327294-95
AGCACAC594900.05.46465894-95
Produced by FastQC (version 0.11.5)