FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005207947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005207947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54858155
Sequences flagged as poor quality0
Sequence length25-101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA649400.09.85808194-95
TAGATCG245800.09.62754394-95
ATCGGAA603750.09.26879494-95
AGATCGG738600.09.1979394-95
ACACGTC226200.08.34969594-95
TCGGAAG609950.07.158991394-95
AAGATCG296200.07.03236394-95
CGTCTGA178000.06.92467894-95
CGGAAGA627450.06.75120294-95
ACGTCTG215750.06.569280694-95
CACACGT298350.06.40521694-95
CAGATCG295400.06.31823494-95
CACGTCT256450.06.27187394-95
GCACACG351850.06.200712794-95
GAGATCG305450.05.3595994-95
AGAGCAC634000.05.06383994-95
Produced by FastQC (version 0.11.5)