EGAF00005207953 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207953
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52960400
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	62845	0.0	9.111988	94-95
ATCGGAA	58500	0.0	8.691532	94-95
AGATCGG	72050	0.0	8.6366415	94-95
TAGATCG	23125	0.0	8.250029	94-95
TCGGAAG	59555	0.0	7.873919	94-95
ACACGTC	22410	0.0	7.545232	94-95
CGGAAGA	62115	0.0	7.3245487	94-95
CGTCTGA	17060	0.0	7.072113	94-95
ACGTCTG	21540	0.0	6.62213	94-95
CACACGT	28435	0.0	6.552643	94-95
GCACACG	33760	0.0	6.240882	94-95
AAGATCG	28345	0.0	6.1436057	94-95
CACGTCT	25215	0.0	6.0458946	94-95
CAGATCG	28450	0.0	5.755347	94-95
GAGATCG	31580	0.0	5.5330853	94-95
AGAGCAC	61260	0.0	5.132286	94-95
AGCACAC	53625	0.0	5.0317698	94-95