EGAF00005207957 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207957
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	69775277
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	100405	0.0	9.305722	94-95
AGATCGG	115505	0.0	9.115461	94-95
TAGATCG	38280	0.0	8.996208	94-95
ATCGGAA	92745	0.0	8.822387	94-95
ACACGTC	32215	0.0	8.236783	94-95
TCGGAAG	92010	0.0	7.915044	94-95
CGTCTGA	25080	0.0	7.816885	94-95
ACGTCTG	30565	0.0	7.358831	94-95
CGGAAGA	93495	0.0	7.3146853	94-95
CACACGT	41310	0.0	7.2106166	94-95
GCACACG	48315	0.0	7.0396266	94-95
AAGATCG	44330	0.0	6.9799385	94-95
CACGTCT	35485	0.0	6.861029	94-95
CAGATCG	41670	0.0	6.2949	94-95
GAGATCG	43730	0.0	5.991414	94-95
AGAGCAC	88510	0.0	5.796711	94-95
AGCACAC	76380	0.0	5.495606	94-95
GAGCACA	90210	0.0	5.1753306	94-95