EGAF00005207965 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207965
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55200326
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	81005	0.0	9.537966	94-95
AGATCGG	93620	0.0	9.448919	94-95
ATCGGAA	74670	0.0	9.362659	94-95
TAGATCG	30200	0.0	9.209426	94-95
ACACGTC	25470	0.0	8.581822	94-95
TCGGAAG	73350	0.0	8.391955	94-95
CGGAAGA	74880	0.0	8.1059475	94-95
CACACGT	33110	0.0	7.7561407	94-95
CGTCTGA	18435	0.0	7.6563706	94-95
AAGATCG	35200	0.0	7.636733	94-95
GCACACG	38980	0.0	7.3110795	94-95
ACGTCTG	23870	0.0	7.0525784	94-95
CACGTCT	28270	0.0	6.9430504	94-95
CAGATCG	34910	0.0	6.6542954	94-95
GAGATCG	36835	0.0	6.3996763	94-95
AGAGCAC	70880	0.0	5.6904907	94-95
AGCACAC	60625	0.0	5.4243083	94-95
GAAGAGC	103445	0.0	5.0692987	94-95
GAGCACA	71055	0.0	5.021233	94-95