EGAF00005207969 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207969
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51671619
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	64220	0.0	9.378361	94-95
ATCGGAA	59800	0.0	9.14194	94-95
AGATCGG	73690	0.0	8.838766	94-95
TAGATCG	24400	0.0	8.650204	94-95
TCGGAAG	59985	0.0	7.99373	94-95
ACACGTC	22150	0.0	7.676798	94-95
CGGAAGA	61535	0.0	7.1353636	94-95
AAGATCG	29435	0.0	6.8069673	94-95
CACACGT	28535	0.0	6.8028846	94-95
CGTCTGA	16700	0.0	6.7999344	94-95
CAGATCG	28145	0.0	6.6225324	94-95
GCACACG	33710	0.0	6.2876534	94-95
ACGTCTG	20875	0.0	6.2374268	94-95
CACGTCT	24395	0.0	5.9832683	94-95
GAGATCG	29630	0.0	5.2672687	94-95
AGAGCAC	61050	0.0	5.219957	94-95
AGCACAC	52940	0.0	5.059396	94-95