EGAF00005207971 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005207971
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	61201436
Sequences flagged as poor quality	0
Sequence length	25-101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGATCG	28905	0.0	9.623164	94-95
AGATCGG	88505	0.0	9.5213785	94-95
GATCGGA	75660	0.0	9.299641	94-95
ATCGGAA	70270	0.0	8.860951	94-95
ACACGTC	25020	0.0	7.7967825	94-95
CGGAAGA	73810	0.0	7.681434	94-95
TCGGAAG	70140	0.0	7.381694	92-93
AAGATCG	34915	0.0	7.095076	94-95
CAGATCG	34130	0.0	6.9996777	94-95
CACACGT	32785	0.0	6.804144	94-95
CGTCTGA	19680	0.0	6.757733	94-95
GCACACG	38510	0.0	6.2430706	94-95
ACGTCTG	23950	0.0	5.9976506	94-95
CACGTCT	28090	0.0	5.947922	94-95
AGAGCAC	72750	0.0	5.6055274	94-95
GAGATCG	36525	0.0	5.590839	94-95
AGCACAC	62560	0.0	5.0056825	94-95