FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005208011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005208011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49847106
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG367800.09.90838494-95
GATCGGA1044000.09.69876294-95
AGATCGG1190050.09.5515594-95
ATCGGAA953150.09.46781994-95
CGTCTGA233150.09.42319694-95
ACACGTC313150.09.16447394-95
TCGGAAG926500.08.56042794-95
GCACACG476500.08.48952794-95
ACGTCTG286200.08.24265694-95
CACACGT390450.08.02534894-95
CAGATCG435000.08.00522794-95
CGGAAGA918650.07.79353794-95
AAGATCG402350.07.61734894-95
GAGATCG441050.07.092176494-95
CACGTCT333400.07.05925594-95
AGAGCAC789500.06.96394994-95
AGCACAC672300.06.580760594-95
GAAGAGC1139350.05.92954894-95
GAGCACA804600.05.915101594-95
AAGAGCA1002000.05.90914694-95
Produced by FastQC (version 0.11.5)