FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005208383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005208383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064578
Sequences flagged as poor quality0
Sequence length49-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGTGC650.007254720727.965153140-144
GCGTAGT1300.00976083617.47822140-144
AAGCGCG1350.00790349513.40786140-144
GTCGCCG4501.15689545E-710.055895140-144
GTAAGCC4500.002893738210.0247218
CGCCGTA3852.586694E-79.515731130-134
TCGCCGT3701.5375048E-59.432141140-144
ATTATCG1150.00655831079.07955565-69
GGTCGCC5005.346519E-79.050304140-144
GCCGTAT4351.5067617E-68.421969130-134
TGGTCGC4658.7600965E-67.7852087140-144
CGTATCA4304.2234414E-47.212539135-139
GTGGTCG4902.498116E-46.856819135-139
CCGTATC4500.00134993276.512989130-134
CTCGGTG5758.256769E-66.4366693120-124
GGTGAAA12352.0556022E-46.3952851
GATCTCG7552.5864087E-56.3931513140-144
TCGGTGG5550.00113242146.053768135-139
GGTCGTG7352.5832322E-55.9777393135-139
GGGGGGG249950.05.9019794140-144
Produced by FastQC (version 0.11.5)