EGAF00005275885 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005275885
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12658702
Sequences flagged as poor quality	0
Sequence length	151
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGGCTGGATGAGTGACAGATGCTGCATGGCTGTCGTCAGCTCGTGTCGTG	42813	0.33821003132864647	No Hit
GGGGTGTGTATATGGCCCAATTGCTTTACACAATAATATATTCCCCCAAT	30397	0.24012730531139764	No Hit
AGGAGGACATTGCTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAA	22975	0.18149570153401196	No Hit
GGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTGTGTAGGCGGATTT	22735	0.17959977255171977	No Hit
GGGGGATAGCGCAGGGATGGACCTATGGCGCATTAGCTGGTTGGCGGGGC	20928	0.1653250072558782	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATC	16946	0.13386838555801378	Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGACGCTAGTTCTTGTGGAGCAGACTTTGAAATACCACCCTTTTGTTA	16263	0.12847288766257395	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATA	15743	0.12436504153427422	Illumina Single End PCR Primer 1 (96% over 33bp)
GAGGCTGGATGAGTGACAGATGCTGCATGGCTGTCGTCAGCTCGTGTCGT	13499	0.10663810554984231	No Hit
GGGGGTGAGTGTACCTTTCGAATAAGCACCGGCTAACTACGTGCCAGCAG	13400	0.10585603484464678	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCGCTA	8155	70.826996	145
GGGGACG	18660	61.574043	1
GATCGGA	30215	52.51567	2
GGGGGTC	6640	50.141663	1
GGGGGCC	15515	49.510616	1
AAGAGCG	31740	49.241024	8
AGATCGG	32470	48.878647	1
GGGGGCT	9220	46.810165	1
GCGCTAA	3990	46.67934	145
GGGGTGT	15250	46.232838	1
GAAGAGC	34500	45.95263	7
AGAGCGT	35335	44.41577	9
GGGAGGA	16625	43.892513	1
GGGGCCG	11070	43.115395	1
GGGGAGA	19240	42.71486	1
GGAGGGC	9705	42.67708	1
GGGGCGC	10675	41.313293	1
GGGGACT	8815	41.30813	1
AGGCTGG	20705	39.587433	1
GAGGACA	12905	38.687664	3