FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005279125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22552931
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA366250.010.45441594-95
ATCGGAA332200.010.29615994-95
AGATCGG421700.010.22879894-95
TAGATCG143350.010.04123994-95
TCGGAAG321600.09.41686994-95
CGGAAGA312600.08.58621794-95
CAGATCG145700.07.95559494-95
AAGATCG145050.07.76198894-95
GAGATCG173900.07.416732394-95
ACACGTC102750.07.09690494-95
GCACACG158400.06.732920694-95
CACACGT140950.06.353142794-95
ACGTCTG102550.06.30007394-95
AGAGCAC293800.06.20900294-95
CACGTCT116600.06.00946594-95
CGTCTGA81450.05.77412994-95
GAAGAGC419650.05.50729194-95
CTAGATC97050.05.48232694-95
TCGTATG22650.05.451572444-45
CTCGTAT23550.05.444895344-45
Produced by FastQC (version 0.11.5)