FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005279131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24063350
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA219750.010.59125194-95
ATCGGAA205600.010.30366794-95
TAGATCG78500.010.13503594-95
AGATCGG257400.09.97395194-95
TCGGAAG211750.08.32205594-95
TCGTATG22600.07.145661444-45
CTCGTAT21700.07.00425944-45
CAGATCG114100.06.84794694-95
CGGAAGA221750.06.84364394-95
AAGATCG94400.06.76753394-95
CGTATGC24000.06.729376346-47
ACGAATC27600.06.02307532-33
TATGCCG25400.05.891243548-49
GAGATCG152250.05.77157794-95
ACACGTC82350.05.65252694-95
CACACGT110500.05.11522594-95
GCACACG131350.05.04457194-95
Produced by FastQC (version 0.11.5)