FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005279133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24233358
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA221700.010.16527194-95
AGATCGG258350.010.12039194-95
TAGATCG76100.09.08085594-95
ATCGGAA209250.09.04505694-95
TCGGAAG217250.08.22008994-95
CGGAAGA227200.07.609243494-95
TCGTATG23000.07.537267744-45
CGTATGC24300.07.32955246-47
CTCGTAT26550.07.066127344-45
CAGATCG116750.06.854747394-95
TATGCCG26650.06.683300548-49
ACGAATC26650.06.683155532-33
AAGATCG98000.06.348829394-95
GAGATCG146250.06.024159494-95
CGAATCT39100.05.04102532-33
Produced by FastQC (version 0.11.5)