FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005279136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40083275
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG109700.09.56934294-95
GATCGGA295650.09.40687794-95
ATCGGAA277100.09.39378294-95
AGATCGG342100.09.157104594-95
CGCCGTA32700.09.15136746-47
AGCGTCG107650.08.09689494-95
TCGGAAG303100.08.03164294-95
GCCGTAT40600.07.54617446-47
CGTATCA44400.07.435481548-49
GCGTCGT96700.07.147150594-95
CGTCGTG101750.06.81576994-95
GAGCGTC163300.06.472026394-95
AGAGCGT179450.06.418960694-95
AAGAGCG211950.06.28631194-95
CGGAAGA328500.06.22492694-95
CCGTATC52700.06.12922548-49
AAGATCG152750.05.97057994-95
GTCGTGT101700.05.931794-95
CAGATCG163950.05.78000194-95
TCGCCGT59750.05.683789344-45
Produced by FastQC (version 0.11.5)