FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005279137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39445988
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG340850.09.66836294-95
GATCGGA294450.09.44898294-95
ATCGGAA275250.09.39163794-95
TAGATCG111700.09.21031394-95
TCGGAAG296150.07.814243394-95
TCGTATG38500.07.524349744-45
CGTATGC41000.07.414048746-47
CTCGTAT39150.07.33877344-45
TATGCCG41100.07.28075748-49
CGGAAGA324100.06.4365894-95
AAGATCG143750.06.36344994-95
CAGATCG156150.06.345031394-95
TATCTCG44400.05.936203540-41
GAGATCG206500.05.47679694-95
ACACGTC125750.05.40378194-95
Produced by FastQC (version 0.11.5)