FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005279138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39445988
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG344500.09.56861194-95
GATCGGA292200.09.51755494-95
ATCGGAA277950.09.18523994-95
TAGATCG105450.09.16635194-95
CGCCGTA29100.08.81443146-47
AGCGTCG110750.07.912820394-95
GCGTCGT101650.07.616560594-95
TCGGAAG305650.07.55249694-95
CGTCGTG101250.07.13061994-95
CGTATCA38400.07.050815648-49
AGAGCGT175350.06.71776194-95
AAGATCG155450.06.554132594-95
GCCGTAT40400.06.525369646-47
AAGAGCG210450.06.488847794-95
CGGAAGA332950.06.25560494-95
GAGCGTC162500.06.1674894-95
CAGATCG164150.06.1488994-95
GTCGTGT101300.06.07210194-95
TCGTGTA88850.05.613200794-95
CCGTATC48000.05.591173648-49
Produced by FastQC (version 0.11.5)