FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005279148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99932634
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGATAA181250.028.1461836-37
CGATAAC183750.026.69107838-39
TAGAGCC505200.026.386771
ATAACCG190800.025.80353740-41
TAACCGG201500.025.58839840-41
TAAGACG204450.024.98318564-65
AGCGATA205000.024.09753836-37
AGCCCGC593950.022.4500584
CGGAGTA229450.022.2495444-45
CGACCAA236100.021.01135370-71
GAGCCCG726550.018.4770053
ATCTCGA286950.018.13574618-19
AGACGAC300400.017.4382666-67
AACCGGA296600.016.86883242-43
GAGTCGC300250.016.76768928-29
AGTCGCC317400.016.49016828-29
GCCGGCG647550.015.5693239
CGCCGGC650200.015.4328298
CCGCCGG660600.015.26995857
GATAACC346600.015.21925538-39
Produced by FastQC (version 0.11.5)