FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005279715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences642401
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATAGTCAGCCTCATCCTCAGACTGGAGCCCAGAGATGAGCAAAGTTC17040.26525487974022455No Hit
GTAATATATCGCCGTGTCTTCAAATCTCAGGCTGCTCAGCTCCATGTAGG15070.23458867592049204No Hit
CTATAAGATATACTGGTTCCAGCAGAAGCCGGGGAGTCCTCCCCACTTTC11660.18150656677059968No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC10840.16874195401314754No Hit
ATATATTACTGTGTCACAATGCCCCGGCATCTTACGACTTTTGGAGTGGT10560.16438330575450538No Hit
GACTATTACTGTATGATTTGGCACAACAGCGCTTGGGAGTTCGGCGGAGG10040.15628867327416987No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9350.14554771863680163No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACTCCCAAGCGCTGTTG9040.14072207235044779No Hit
ATCTTATAGGTACCAACATCGATGCCACTGCGTAAGGTGCAGGCGAGACT9020.14041074033197332No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCA8170.12717912954680954No Hit
GTACTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAG8020.12484413940825123No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACTCCCA7810.1215751532142696No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT6850.10663121632749636No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT6810.1060085522905475No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA6780.10554155426283583No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC6630.10320656412427752No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)