FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005279716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences642401
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATAGTCAGCCTCATCCTCAGACTGGAGCCCAGAGATGAGCAAAGTTC16110.250777940881163No Hit
GTAATATATCGCCGTGTCTTCAAATCTCAGGCTGCTCAGCTCCATGTAGG14370.22369205527388655No Hit
CTATAAGATATACTGGTTCCAGCAGAAGCCGGGGAGTCCTCCCCACTTTC11530.1794829086505158No Hit
ATATATTACTGTGTCACAATGCCCCGGCATCTTACGACTTTTGGAGTGGT10960.17060994612399422No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC10600.16500596979145424No Hit
GACTATTACTGTATGATTTGGCACAACAGCGCTTGGGAGTTCGGCGGAGG10180.15846799740349096No Hit
ATCTTATAGGTACCAACATCGATGCCACTGCGTAAGGTGCAGGCGAGACT9660.15037336492315548No Hit
GTACTGACTCAGCCGTCTTCCCTCTCTGCATCTCCTGGAGCATCAGCCAG9010.14025507432273612No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACTCCCAAGCGCTGTTG8310.12935845367613064No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACTCCCA7990.12437714138053957No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCA7490.11659384091867853No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA7010.10912187247529191No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC6920.10772087839215692No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT6520.10149423802266809No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)