FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005279742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences922277
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATAGAAGGCCGTGTCCTCAGATCTCAGGCTGCTCAGCTCCATGTAGG16640.18042301824722942No Hit
TTCTATTACTGTGCGACCGTTTACTATTTAGCAGCAGCTCCTACCTACTA11940.1294621897759567No Hit
GTAATAATCAGCCTCATCCTCAGCCTGGAGCCCAGAGATGGTCAGGGAGG10630.11525821418077214No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC9870.10701773978967273No Hit
GATTATTACTGCTGCTCATATGCAGGCAGCTATACTTGGGTGTTCGGCGG9640.10452391201341896No Hit
GTTATAAATATGTCTCCTGGTACCAACACCACCCAGGGAAAGCCCCCAAA9490.10289750259412302No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)