FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005279827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences778167
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT13290.17078596239624655No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC13180.16937238407693977No Hit
GTATATGGTGCCACCGTTACCACTGATAGTCGAGACCCACTCCAGCCCCT12780.16423209927946056No Hit
TTTAAAAGGTGTCCAGTGTGAGGTGCATCTGTTGGAGTCTGGGGGAGGCT12380.15909181448198137No Hit
GTAATACACGGCGGAATCCTCGGCTCTCAGGCTGTTCATTTGCAGATGCA12220.1570357005629897No Hit
CTTTTATACAATTCCAACAAAAAGAACTACTTAGCTTGGTACCAGCAGAA10540.13544650441357703No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10460.1344184474540812No Hit
TCTGGGCACTGTGTGGCCGGCAGGGTCAGCTGGCTGCTCGTGGTGTACAG9980.12825010569710615No Hit
CAGTAATACACGGCGGAATCCTCGGCTCTCAGGCTGTTCATTTGCAGATG9740.12516593481861862No Hit
CCCTAAGACATTGCTTTCAAAATAATAAGGAAGGGACGCCCGCACACAGT9350.1201541571410764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)