FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005279890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences846089
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATACACGGCCGTGTCCTCAAATCTCAGGCTGCTCAGCTCCATGTAGG19000.2245626642114482No Hit
GTGTATTACTGTGCGAGAGGTTCAGGCGCCTATGATACTAGTGGTTATTG15480.1829594758943799No Hit
GTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCG13800.16310340874305185No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT13700.16192149998404423No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT12620.14915688538676192No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCT10820.12788252772462472No Hit
TCCCTATCTTTGGTACAACAACGTACGCACAGAACTTCCAGGGCAGAGTC10790.12752795509692244No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA10680.12622785546201407No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC10660.12599147371021252No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT10650.12587328283431176No Hit
GGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGGTCA10500.12410041969580032No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC10020.11842725765256375No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC9120.10779007882149513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)