EGAF00005279893 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005279893
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1247657
Sequences flagged as poor quality	0
Sequence length	150
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAATAACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCA	3738	0.29960157318878505	No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT	2964	0.23756529238404467	No Hit
GTTATTATACTGCTGACAGTAATAAACTGCAGAATCTTCAGACTGCAGGC	2501	0.2004557342282374	No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC	2454	0.1966886732491382	No Hit
TTATTATACTGCTGACAGTAATAAACTGCAGAATCTTCAGACTGCAGGCT	2161	0.17320465480496644	No Hit
CTCCTGTAGGGCCGGTCAGAGTGTTAGCAACAACGTTGCCTGGTATCGGC	1948	0.15613265504862311	No Hit
GTAATATACGGCCGTGTCCTCGGCCGTCAGGCCGTTCATTTGGAGAAACA	1681	0.13473254267799564	No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTC	1631	0.13072503099810284	No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT	1513	0.12126730343355585	No Hit
GTCTCCAGCCATCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCT	1441	0.11549648661451023	No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG	1338	0.10724101255393109	No Hit
GTCTGGGACAGAGTTCAGTCTCACCATCAGCAGCCTGCAGTCTGAAGATT	1279	0.10251214877165761	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	2565	54.297745	1
TCAACGC	2685	50.407753	4
ATCAACG	2885	46.913284	3
CAACGCA	2900	46.670624	5
AACGCAG	3000	44.87496	6
TATCAAC	3255	42.497643	2
CGCAGAG	3370	39.948044	8
ACGCAGA	3995	33.87855	7
GCAGAGT	4115	32.71565	9
GTACATG	3410	31.954678	1
TATACGG	740	30.15878	5
TACATGG	3530	28.777893	2
ATACGGC	755	28.606064	6
ACATGGG	3925	25.862066	3
TATACAG	700	25.711401	5
ACTACGC	830	24.286432	8
GTGCTAG	565	24.267054	1
GTATATA	655	23.136084	1
ATATACG	970	23.007729	4
CATGGGG	2450	22.626034	4