FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005279915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1071805
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTACTGTCAGCAGTATGATACTTCACCCCGGACGTTTGGCCAGGGGA24100.22485433451047535No Hit
GTAATAAAGGGCCGTGTCGTCAGATCTCAGGCCGCTCAGCTCCATGTAGG23290.2172969896576336No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT22070.20591432210150168No Hit
GTCTGGGACTGAGGTGAAGAAACCTGGATCCTCGGTGAAGGTCTCCTGCA18050.16840749949850953No Hit
GTATGATACTTCACCCCGGACGTTTGGCCAGGGGACCAAGCTGCAGATCA15860.1479746782297153No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC15520.14480245940259656No Hit
CAGTAATACACTGCAAAATCCTCAGGCTCCAGTCTGGTGATGGTGAGAGT15400.1436828527577311No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15080.14069723503808995No Hit
CTTTATTACTGTGCGAGAGAGGATCCCCAGAGAGGTTTACAGATTTATGA13830.12903466582074163No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT12360.11531948442114004No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC12340.11513288331366246No Hit
GCCTACATGGAGCTGAGCGGCCTGAGATCTGACGACACGGCCCTTTATTA12030.1122405661477601No Hit
GTCTCCAGGCGCCCTGTCTTTGTCTCCCGGGGAGAGAGCCACCCTCTCCT11440.1067358334771717No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)