FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005279983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005279983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77565647
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA2399750.309383095843963No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGC1501420.19356764986437874No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC1388720.17903802181911793No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT1215860.15675238292023788No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG1048670.1351977377304672No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCATGCCTGT1047330.1350249808397782No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTAAATTTTTTACTCTCTCTACAAG992660.1279767575457728No Hit
AGTTGGTTGATTGTAGATATTGGGCTGTTAATTGTCAGTTCAGTGTTTTA902170.11631051050215568No Hit
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG836550.10785057978050513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)