EGAF00005280401 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005280401
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2022772
Sequences flagged as poor quality	0
Sequence length	150
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATATACACTGGTACCAGCAGCTTCCCGGAACAGCCCCCAAACTCCTCAT	5231	0.2586055175768698	No Hit
CCTTATGATATACACTGGTACCAGCAGCTTCCCGGAACAGCCCCCAAACT	5160	0.2550954828324695	No Hit
GTAATATACAGCCGTGTCCTCAGTTCTCAGGCTGTTCATTTGCAGAAACA	3886	0.19211260586956908	No Hit
GTCATAGGACTGGCAGTAATAATCAGCCTCATCCTCAGCCTGGAGCCCAG	3813	0.1885036969070167	No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC	3465	0.17129958294854783	No Hit
ATGATATACACTGGTACCAGCAGCTTCCCGGAACAGCCCCCAAACTCCTC	3199	0.1581493119343159	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3168	0.15661676155295803	No Hit
GACCTAGGACGGTCAGCCTGGTCCCTCCGCCGAATACCACACCACCCAGG	3050	0.15078318268198296	No Hit
GTATATTACTGTGCGACGAGAGGAGGGGGGGGAAAGGAGACAGTAGTGGT	2794	0.13812728275851158	No Hit
TCCTATGACAGTAGCCTGGGTGGTGTGGTATTCGGCGGAGGGACCAGGCT	2733	0.13511161910487193	No Hit
ACCCAGGCTACTGTCATAGGACTGGCAGTAATAATCAGCCTCATCCTCAG	2674	0.1321948296693844	No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCCTGGTCCCTCCGCCGAATACCAC	2661	0.1315521472513956	No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT	2250	0.11123349542113496	No Hit
CTCCTGCACTGGGAGCAGCTCCCACATCGGGTCACCTTATGATATACACT	2202	0.10886051418548406	No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC	2192	0.10836614309472348	No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGA	2064	0.10203819313298779	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	4185	80.378334	1
GGTATCA	1765	73.05095	1
ATCAACG	5340	62.298656	3
TCAACGC	5365	62.008358	4
TATCAAC	5590	59.512493	2
CAACGCA	5600	59.274708	5
AACGCAG	5815	57.204117	6
CGCAGAG	6935	47.75685	8
GCAGAGT	7640	43.255726	9
ACGCAGA	8635	38.438183	7
GTACATG	6280	33.83607	1
TACATGG	6480	31.447737	2
ACATGGG	6420	31.405157	3
GTATATA	965	30.603712	1
CAGAGTA	7380	27.609232	9
CATGGGG	4385	26.930984	4
CCTTATG	3260	26.07246	1
TATACAG	2460	24.001326	5
CTGTGCG	2350	22.97829	9
AATATAC	2170	22.232744	3