FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences949076
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC24510.25825118325613544No Hit
GACCTAGGACGGTCAATTTGGTCCCTCCGCCGAATACCTGACCCAGGCTG13860.14603677682293092No Hit
TCTCTACACAGTGAAACTTTTTTTAAAAAGAATAGTAAAGAAAATGCGGA12570.13244460928313434No Hit
CTCCTGCACTGGGACCAGCTCCAACATCGGGGCAGGTCATGGCGTTCATT12360.13023193084642326No Hit
GTCCTGGGCCCAGCCTGTGCTGACGCAGCCGCCCTCAGTGTCTGCGGCCC12290.12949437136751957No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC11960.12601730525268787No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT11120.11716659150584358No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT10510.11073928747539713No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)