FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences926249
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTACTGTCAGCATTATGGTACCCCACCTCGGAATTTTGGCCAGGGGA31230.33716635591509414No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT26700.28825942052299114No Hit
CAGTAATATACTGCAAAATCCTCAGGCTCCAGTCTGCTGATGGTCAGAGT21300.22995976243968952No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC20660.22305017333352048No Hit
GTATATTACTGTCAGCATTATGGTACCCCACCTCGGAATTTTGGCCAGGG18190.1963834778768992No Hit
GTAATATACTGCAAAATCCTCAGGCTCCAGTCTGCTGATGGTCAGAGTGA17630.19033758740900125No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC15100.16302311797367663No Hit
GTCTCCAGGCACCCTGTCTGTGTCTACGGGGGAAAGAGCCACCCTCTCCT14540.15697722750577867No Hit
GAGTATTAGTAGCGGCTCCTTAGCCTGGTACCAGCAGAGACCTGGCCAGC14230.15363039528247804No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT13990.15103929936766464No Hit
GCATTATGGTACCCCACCTCGGAATTTTGGCCAGGGGACCAAGCTAGACA13710.14801635413371567No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC11960.1291229464215346No Hit
CCATAATGCTGACAGTAATATACTGCAAAATCCTCAGGCTCCAGTCTGCT11810.1275035114747762No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG11770.12707166215564064No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11330.1223213196451494No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG11250.12145762100687829No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC11170.12059392236860715No Hit
GTCTGTGTCTACGGGGGAAAGAGCCACCCTCTCCTGCAGGACCAGCCAGA10840.1170311654857387No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG10450.11282063462416693No Hit
ATGGTACCCCACCTCGGAATTTTGGCCAGGGGACCAAGCTAGACATCAAA10220.11033750103913742No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT9940.10731455580518846No Hit
GTCCCAGAGCCACTGCCTTGGAACCTGTCTGGGATGCCAGTGGGCCTGCT9720.10493938454994284No Hit
GTATTAGTAGCGGCTCCTTAGCCTGGTACCAGCAGAGACCTGGCCAGCCT9540.10299606261383278No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)