FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences926249
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATTACTGTCAGCATTATGGTACCCCACCTCGGAATTTTGGCCAGGGGA28030.30261841038424875No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT25740.2778950368637375No Hit
CAGTAATATACTGCAAAATCCTCAGGCTCCAGTCTGCTGATGGTCAGAGT19710.21279375200405076No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC18340.1980029128236576No Hit
GTATATTACTGTCAGCATTATGGTACCCCACCTCGGAATTTTGGCCAGGG17830.1924968340046791No Hit
GTAATATACTGCAAAATCCTCAGGCTCCAGTCTGCTGATGGTCAGAGTGA17480.18871815246224288No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC14450.15600556653772366No Hit
GAGTATTAGTAGCGGCTCCTTAGCCTGGTACCAGCAGAGACCTGGCCAGC14180.15309058363355857No Hit
GTCTCCAGGCACCCTGTCTGTGTCTACGGGGGAAAGAGCCACCCTCTCCT14010.1512552240272324No Hit
GCATTATGGTACCCCACCTCGGAATTTTGGCCAGGGGACCAAGCTAGACA13230.14283416230408885No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT13120.14164657667646605No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC11810.1275035114747762No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG11800.12739554914499232No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC11070.11951429907076823No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG11020.11897448742184877No Hit
TCTCTACACAGTGAAACTTTTTTTAAAAAGAATAGTAAAGAAAATGCGGA10970.11843467577292931No Hit
CCATAATGCTGACAGTAATATACTGCAAAATCCTCAGGCTCCAGTCTGCT10950.11821875111336151No Hit
GTCTGTGTCTACGGGGGAAAGAGCCACCCTCTCCTGCAGGACCAGCCAGA10540.11379229559222197No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT10180.10990565172000187No Hit
GTATTAGTAGCGGCTCCTTAGCCTGGTACCAGCAGAGACCTGGCCAGCCT9920.10709863114562067No Hit
ATGGTACCCCACCTCGGAATTTTGGCCAGGGGACCAAGCTAGACATCAAA9600.10364383659253613No Hit
GTCCCAGAGCCACTGCCTTGGAACCTGTCTGGGATGCCAGTGGGCCTGCT9410.10159255232664219No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)