FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1447850
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATACACGGCCGTGTCCGCGGCGGTCACAGAGCTCAGCTTCAGGGAGA24290.16776599785889423No Hit
GTCTCTGGTGGCTCCATCAATAGTTACTACTGGAGCTGGATCCGGCAGCC20830.14386849466450252No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG19690.13599475083744864No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT19070.13171253928238422No Hit
CTCCTGTACTGGGAACAGCAACAACGTTGGAAGTTATGCTGTGGGCTGGT18630.12867355043685466No Hit
TCCTAAGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC18220.12584176537624753No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT18160.1254273578064026No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG17780.12280277653071796No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGA17340.11976378768518837No Hit
GTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGT17170.11858963290396106No Hit
GTAATAATTAGCCTCGTCCTCAGGCCAGAGGCCCGAGATACTCAGGGAGG16520.11410021756397416No Hit
GTTTAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGC16390.1132023344959768No Hit
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC16160.11161377214490452No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15960.1102324135787547No Hit
CTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGCTCA14990.10353282453292813No Hit
GACTTAGGACGGTCAGCTTGGTCCCTCCGCCGAATATCACATGGTTACCA14920.1030493490347757No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG14900.10291121317816071No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA14790.10215146596677833No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)